Opis

• Tytuł:
  Data set for transcriptome analysis of pituitary galnd in cattle breeds
• Twórca:
  Herudzińska, Magdalena;
  Sachajko, Mateusz;
  Jaskowski, Jedrzej M.;
  Szczepanek, Joanna;
  Buszewska-Forajta, Magdalena;
  Feng, Yaping;
  Kumar, Dibyendu;
  Pareek, Chandra Shekhar
• Opis:
  Transcriptome data presented in this article is associated with the research article entitled “Single nucleotide polymorphism discovery in bovine pituitary gland using RNA-seq technology” published in PLOS One [1]. Herein, we provide raw and analysed RNA-seq data of pituitary gland tissues from three cattle breeds, viz., Polish-HF, Polish Red and Hereford cattle breeds. Bioinformatics pipelines of high-quality RNA-seq data includes the FastQC tools for quality controls, Trimmomatic cutadapt tools for trimming RNA-seq data, and BWA version 0.7.5-r404 for mapping and alignment to the Bos taurus reference genome, SAMtools for SNPs identifications in bovine pituitary gland transcriptome. Raw FASTq files for the RNA-seq libraries of bovine pituitary gland were deposited in the NCBI Sequence Read Archive (SRA) and have been assigned BioProject accession PRJNA312148.
• Dostępność obiektu:
  Dostęp otwarty
• Prawa:
  Prawa autorskie (c) 2020 Translational Research In Veterinary Science
• Data:
  2020.01.16
• Typ:
  info:eu-repo/semantics/article;
  info:eu-repo/semantics/publishedVersion
• Język:
  angielski
• Źródło:
  Translational Research in Veterinary Science; Vol. 2 No. 2 (2019); 57-61;
  Translational Research In Veterinary Science; Tom 2 Nr 2 (2019); 57-61;
  2657-4489
• Format:
  application/pdf
• Wydawca:
  Nicolaus Copernicus University in Toruń
• Relacja: https://apcz.umk.pl/TRVS/article/view/TRVS.2019.010/24478
• Temat i słowa kluczowe:
  RNA-seq;
  cattle;
  pituitary gland;
  breeds;
  NGS;
  SNPs;
  SAMtools;
  BWA;
  FastQC;
  SRA;
  NCBI
• Identyfikator: https://apcz.umk.pl/TRVS/article/view/TRVS.2019.010
• Dostawca danych:
  Akademicka Platforma Czasopism
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