Description

• Title:
  Genome sequence and analysis of the tuber crop potato.
• Creator:
  Xu, Xun;
  Pan, Shengkai;
  Cheng, Shifeng;
  Zhang, Bo;
  Mu, Desheng;
  Ni, Peixiang;
  Zhang, Gengyun;
  Yang, Shuang;
  Li, Ruiqiang;
  Wang, Jun;
  Orjeda, Gisella;
  Guzman, Frank;
  Torres, Michael;
  Lozano, Roberto;
  Ponce, Olga;
  Martinez, Diana;
  De la Cruz, Germán;
  Chakrabarti, S K;
  Patil, Virupaksh U;
  Skryabin, Konstantin G;
  Kuznetsov, Boris B;
  Ravin, Nikolai V;
  Kolganova, Tatjana V;
  Beletsky, Alexey V;
  Mardanov, Andrei V;
  Di Genova, Alex;
  Bolser, Daniel M;
  Martin, David M A;
  Li, Guangcun;
  Yang, Yu;
  Kuang, Hanhui;
  Hu, Qun;
  Xiong, Xingyao;
  Bishop, Gerard J;
  Sagredo, Boris;
  Mejía, Nilo;
  Zagórski-Ostoja, Włodzimierz;
  Gromadka, Robert;
  Gawor, Jan;
  Szczesny, Pawel;
  Huang, Sanwen;
  Zhang, Zhonghua;
  Liang, Chunbo;
  He, Jun;
  Li, Ying;
  He, Ying;
  Xu, Jianfei;
  Zhang, Youjun;
  Xie, Binyan;
  Du, Yongchen;
  Qu, Dongyu;
  Bonierbale, Merideth;
  Ghislain, Marc;
  Herrera, Maria del Rosario;
  Giuliano, Giovanni;
  Pietrella, Marco;
  Perrotta, Gaetano;
  Facella, Paolo;
  O'Brien, Kimberly;
  Feingold, Sergio E;
  Barreiro, Leandro E;
  Massa, Gabriela A;
  Diambra, Luis;
  Whitty, Brett R;
  Vaillancourt, Brieanne;
  Lin, Haining;
  Massa, Alicia N;
  Geoffroy, Michael;
  Lundback, Steven;
  DellaPenna, Dean;
  Buell, C Robin;
  Sharma, Sanjeev Kumar;
  Marshall, David F;
  Waugh, Robbie;
  Bryan, Glenn J;
  Destefanis, Marialaura;
  Nagy, Istvan;
  Milbourne, Dan;
  Thomson, Susan J;
  Fiers, Mark;
  Jacobs, Jeanne M E;
  Nielsen, Kåre L;
  Sønderkær, Mads;
  Iovene, Marina;
  Torres, Giovana A;
  Jiang, Jiming;
  Veilleux, Richard E;
  Bachem, Christian W B;
  de Boer, Jan;
  Borm, Theo;
  Kloosterman, Bjorn;
  van Eck, Herman;
  Datema, Erwin;
  Hekkert, Bas te Lintel;
  Goverse, Aska;
  van Ham, Roeland C H J;
  Visser, Richard G F
• Description:
  Potato (Solanum tuberosum L.) is the world's most important non-grain food crop and is central to global food security. It is clonally propagated, highly heterozygous, autotetraploid, and suffers acute inbreeding depression. Here we use a homozygous doubled-monoploid potato clone to sequence and assemble 86% of the 844-megabase genome. We predict 39,031 protein-coding genes and present evidence for at least two genome duplication events indicative of a palaeopolyploid origin. As the first genome sequence of an asterid, the potato genome reveals 2,642 genes specific to this large angiosperm clade. We also sequenced a heterozygous diploid clone and show that gene presence/absence variants and other potentially deleterious mutations occur frequently and are a likely cause of inbreeding depression. Gene family expansion, tissue-specific expression and recruitment of genes to new pathways contributed to the evolution of tuber development. The potato genome sequence provides a platform for genetic improvement of this vital crop.
• Object availability:
  free access
• Date:
  2011.07.14
• Type:
  Article;
  PeerReviewed
• Language:
  English
• Format:
  application/pdf
• Relation: http://eprints.ibb.waw.pl/152 ;http://www.nature.com/nature/journal/v475/n7355/full/nature10158.html ;
  PMID: 21743474
• Subject:
  QH426 Genetics;
  SB Plant culture
• Identifier: http://eprints.ibb.waw.pl/152/1/nature10158.pdf ;
  Xu, Xun and Pan, Shengkai and Cheng, Shifeng and Zhang, Bo and Mu, Desheng and Ni, Peixiang and Zhang, Gengyun and Yang, Shuang and Li, Ruiqiang and Wang, Jun and Orjeda, Gisella and Guzman, Frank and Torres, Michael and Lozano, Roberto and Ponce, Olga and Martinez, Diana and De la Cruz, Germán and Chakrabarti, S K and Patil, Virupaksh U and Skryabin, Konstantin G and Kuznetsov, Boris B and Ravin, Nikolai V and Kolganova, Tatjana V and Beletsky, Alexey V and Mardanov, Andrei V and Di Genova, Alex and Bolser, Daniel M and Martin, David M A and Li, Guangcun and Yang, Yu and Kuang, Hanhui and Hu, Qun and Xiong, Xingyao and Bishop, Gerard J and Sagredo, Boris and Mejía, Nilo and Zagórski-Ostoja, Włodzimierz and Gromadka, Robert and Gawor, Jan and Szczesny, Pawel and Huang, Sanwen and Zhang, Zhonghua and Liang, Chunbo and He, Jun and Li, Ying and He, Ying and Xu, Jianfei and Zhang, Youjun and Xie, Binyan and Du, Yongchen and Qu, Dongyu and Bonierbale, Merideth and Ghislain, Marc and Herrera, Maria del Rosario and Giuliano, Giovanni and Pietrella, Marco and Perrotta, Gaetano and Facella, Paolo and O'Brien, Kimberly and Feingold, Sergio E and Barreiro, Leandro E and Massa, Gabriela A and Diambra, Luis and Whitty, Brett R and Vaillancourt, Brieanne and Lin, Haining and Massa, Alicia N and Geoffroy, Michael and Lundback, Steven and DellaPenna, Dean and Buell, C Robin and Sharma, Sanjeev Kumar and Marshall, David F and Waugh, Robbie and Bryan, Glenn J and Destefanis, Marialaura and Nagy, Istvan and Milbourne, Dan and Thomson, Susan J and Fiers, Mark and Jacobs, Jeanne M E and Nielsen, Kåre L and Sønderkær, Mads and Iovene, Marina and Torres, Giovana A and Jiang, Jiming and Veilleux, Richard E and Bachem, Christian W B and de Boer, Jan and Borm, Theo and Kloosterman, Bjorn and van Eck, Herman and Datema, Erwin and Hekkert, Bas te Lintel and Goverse, Aska and van Ham, Roeland C H J and Visser, Richard G F (2011) Genome sequence and analysis of the tuber crop potato. Nature, 475 (7355). pp. 189-95. ISSN 1476-4687
• Data provider:
  Repozytorium Instytutu Biochemii i Biofizyki Polskiej Akademii Nauk
• Can I use it?:
  seek permission
• Type:
  other